Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIDPNSIGAVTEPMLFEWTDRDTLLYAIGVGAGTGDLAFTTENSHGIDQQVLPTYAVICCPAFGAAAK-----VGTFNPAALLHGSQGIRLHA-PLPAAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDPESGSLVAETLTTLVLRGQGGFGGARGERPA--APEF--PDRHPDARIDMPTREDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEVAGSDGAEARVVLDDGAVEYVAG |
| 1PN4 Chain:D ((6-274)) | ---------------VWRFDDRDVILYNIALGATTKQLKYVYENDS--DFQVIPTFGHLITFNSGKSQNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFE--PIATTPKGTNVVIVHGSKSVDNKSGELIYSNEATYFIRNCQADNKVYADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLQIDPNFA-KGAKFPKPILHGMCTYGLSAKALIDKFGM-----FNEIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVD----RGTIAINNAAIKLV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PN4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112113 for 2137 contacts (-52.5/contact) +
2D Compatibility (PS) -27559 + (NN) -12903 + (LL) 1312
1D Compatibility (HY) -20800 + (ID) 5100
Total energy: -177163.0 ( -82.90 by residue)
QMean score : 0.430
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