Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQLPRVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA---PVSVSATTTDGLGLTGRGEGLAAIATALVVSLR
5B8F Chain:B ((9-163))
-----RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMA--
General information:
TITO was launched using:
RESULT:
Template:
5B8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133896 for 1283 contacts (-104.4/contact) +
2D Compatibility (PS) -17008 + (NN) -12856 + (LL) 560
1D Compatibility (HY) -9600 + (ID) 3200
Total energy: -176000.0 ( -137.18 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_5B8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5B8F-query.scw
PDB file :
Tito_Scwrl_5B8F.pdb
: