Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEILVTGGAGFQGSHLTESLLANG---HWVTVLDKSSRNAVR-NMQGFRSHDRAAFISGSVTDGQTIDRAVRDHHVVFHLAAHVNVDQSLGDPESFLETNVMGTYRVLEAVRRYRNRLIYVSTCEVYGD--------GHNLKEGERLDEHAELKPNSPYGASKAAADRLCYSYFRSYGLDVTIVRPFNIFGVRQKAGRFGALIPRLVRQGINGEGLTIFGAGSATRDYLYVSDIVGAYNLVLRTPTLRGQAINFASGKDTRVRDIVEYVADKFGA---RIEHRDARPGEVQRFPADIS-LAKSIGFQPQ-VEIWDGIDRYINWAKDQPQYPYEQDGFSGSSVL |
| 1KER Chain:B ((7-328)) | --IIVTGGAGFIGSNFVHYVYNNHPDVH-VTVLDKLTYAGNKANLEAILG-DRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKF---IPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAIL-TKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDW------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176735 for 2681 contacts (-65.9/contact) +
2D Compatibility (PS) -32367 + (NN) -6465 + (LL) 932
1D Compatibility (HY) -16400 + (ID) 5100
Total energy: -236135.0 ( -88.08 by residue)
QMean score : 0.530
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