Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKGRSALLRALWIAALSFGLGGVAVAAEPTAKAAPYENLMVPSPSMGRDIPVAFLA--GGPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTNWEQD-------GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAM-------IGQAAEAMGNSRMFYNQYRSVGGH-NGHFDFPASGDNGWGSWAPQLGAMSGDIVGAIR |
1SFR Chain:A ((3-282)) | ------------------------------RPGLPVEYLQVPSPSMGRDIKVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNG----KPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGG-GHNGVFDFPDSGTHSWEYWGAQLNAMKPDLQRAL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131434 for 2350 contacts (-55.9/contact) +
2D Compatibility (PS) -28471 + (NN) -14278 + (LL) 2240
1D Compatibility (HY) -18400 + (ID) 5250
Total energy: -195593.0 ( -83.23 by residue)
QMean score : 0.455
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