Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDELRRAEGIDA
3QF3 Chain:D ((4-131))
--TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDELRRAEGI--
General information:
TITO was launched using:
RESULT:
Template:
3QF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55547 for 763 contacts (-72.8/contact) +
2D Compatibility (PS) -14654 + (NN) -11148 + (LL) 248
1D Compatibility (HY) -14800 + (ID) 6400
Total energy: -102301.0 ( -134.08 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_3QF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QF3-query.scw
PDB file :
Tito_Scwrl_3QF3.pdb
: