Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
5F1J Chain:A ((26-219))
---------------------GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGEN-
General information:
TITO was launched using:
RESULT:
Template:
5F1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101823 for 1382 contacts (-73.7/contact) +
2D Compatibility (PS) -21428 + (NN) -15940 + (LL) 1172
1D Compatibility (HY) -24800 + (ID) 9700
Total energy: -172519.0 ( -124.83 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_5F1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5F1J-query.scw
PDB file :
Tito_Scwrl_5F1J.pdb
: