Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN
3NOF Chain:B ((8-114))
-----KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV----
General information:
TITO was launched using:
RESULT:
Template:
3NOF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75848 for 789 contacts (-96.1/contact) +
2D Compatibility (PS) -11583 + (NN) -3193 + (LL) 136
1D Compatibility (HY) -14400 + (ID) 5300
Total energy: -110188.0 ( -139.66 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_3NOF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NOF-query.scw
PDB file :
Tito_Scwrl_3NOF.pdb
: