Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSL--LILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGGEVGLIVYCPHGPDDG-------CDCRKPKPGMLRQIGEHYGVDLSGIWFVGDSIGDLEAARAVDC-QPVLVKTGKGVRTLGKPLPEGTLIFDDLAAVASALLQ
2GMW Chain:B ((24-181))
---SVPAIFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIKKQQ
General information:
TITO was launched using:
RESULT:
Template:
2GMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88742 for 1166 contacts (-76.1/contact) +
2D Compatibility (PS) -17434 + (NN) -17402 + (LL) 204
1D Compatibility (HY) -14000 + (ID) 2950
Total energy: -140324.0 ( -120.35 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_2GMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GMW-query.scw
PDB file :
Tito_Scwrl_2GMW.pdb
: