Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPNSVSYYRSASYSHVGMVRKVNEDASLDAP-EAGLWVVADGMGGHAAGDFVSSLIVDTLRRIPAASSL---PAYVGALRTGLAQVNERVRQEAGLR-GVSVMGSTLVLLAAR--GNQASCLWAGDSRLYRLRGGVLEAISRDHSYVQELLDNALISEEEARHHPRANVVTRAVGVHEQLELSEAALHVLPGDSFLLCSDGLNKTADDSELRDVLSHSDPYAVVRSLVHLGLTRGAPDNITALVVRAF
2J82 Chain:A ((2-240))
---------DVAGLTDCGLIRKSNQDAFYIDEKHQRFFIVADGM---AGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAF-AANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQA----------------RHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV-
General information:
TITO was launched using:
RESULT:
Template:
2J82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132692 for 1909 contacts (-69.5/contact) +
2D Compatibility (PS) -21876 + (NN) -2711 + (LL) 1596
1D Compatibility (HY) -10800 + (ID) 3350
Total energy: -169833.0 ( -88.96 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_2J82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J82-query.scw
PDB file :
Tito_Scwrl_2J82.pdb
: