Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPQAAVADRKFLEIDV---DNFDARLKAMKPRVAFNVPNVLTGEGNLSLDITFESMDDFSPAAVARKVDSLNKLLEARTQLANLLTYMDGKTGAEEMIMKAIKDPALLQALASAPKPKDDEPQA
3WTT Chain:A ((1-119))
GELVRTDSPNFLCSVLPTHWR---------CNKTLPIAFKVVAKGD-----------VPDGTLVTVMAGNDENYSAELR--------NATAAMKNQVARFNDLRFVGR--------SGRGKSFTLTITVFTNPPQVATYHR-----------------AIKITVDGPR----EPRR
General information:
TITO was launched using:
RESULT:
Template:
3WTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15808 for 835 contacts (-18.9/contact) +
2D Compatibility (PS) -11514 + (NN) 927 + (LL) 3360
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -25685.0 ( -30.76 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_3WTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WTT-query.scw
PDB file :
Tito_Scwrl_3WTT.pdb
: