Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAKVDTRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGINGKTAGSAYSGEQQVDVGREVKVQFMTSNNIDMVWEFRSAGDQLVVHPGAV-NQMVFYARNPSDKPMTAQAIPSIAPAEAAAYFHKTECFC-FTQQVLQPGESIEMPVRFIVDRDLPKDVRHVTLAYTLFDITARKPPVPVAGR
2KZK Chain:A ((246-307))
---------------------------------------------------------------------------------NDPLLHVEVSNEDNSLHFILYNKTNIIIPGNCTFEF------SSQISEVFSIKMGPHEIGIKGQKELW-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22813 for 321 contacts (-71.1/contact) +
2D Compatibility (PS) -6838 + (NN) -3645 + (LL) 9664
1D Compatibility (HY) -1200 + (ID) 300
Total energy: -25132.0 ( -78.29 by residue)
QMean score : 0.040
(partial model without unconserved sides chains):
PDB file :
Tito_2KZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KZK-query.scw
PDB file :
Tito_Scwrl_2KZK.pdb
: