Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGFEARTQQGAALRPTSHFVYESIYTAILEKRLAPAAKLSKETLGQIFRVSNGTIQRALTRLAEDGAVVMPPKEVASVARPDERQARQVLDARLLVESEVVRQLPAGLDPAALAELRALVDEEQACLAARDSAGLIRLAGRFHLRLAELTENPLLQGFVRGLVARASLDIAL-NKGAVYTAEACAAQRALLDALEDGDSAAAAALMDAYLRGLFARMRFLPPPTTDLREAFGMKAPSGEKRRRA
3C7J Chain:A ((20-230))
---------EQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAASYIEQLEV---ETDFGQIGRLNRMFHLSLYAKTHNKRLMRLVEEGLNEEERFLRFNLSSMGLGKLSQDDHWQLLRLAEQKAVEPCVEALQYHLNRGVQAVTQYLQSQKAGNV---------------
General information:
TITO was launched using:
RESULT:
Template:
3C7J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99260 for 1502 contacts (-66.1/contact) +
2D Compatibility (PS) -23420 + (NN) -17615 + (LL) 1876
1D Compatibility (HY) -9600 + (ID) 2050
Total energy: -150069.0 ( -99.91 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3C7J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C7J-query.scw
PDB file :
Tito_Scwrl_3C7J.pdb
: