Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPYALLSLLATGTLLAQGAWAEDPEVLFKNKGCVACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQK
1YNR Chain:C ((2-80))
-------------------------EQLAKQKGCMACHDLKAKKVGPAYADVAKKYAGRKDAVDYLAGKIKKGGSGVWGSVPMPPQNVTDAEAKQLAQWILSIK
General information:
TITO was launched using:
RESULT:
Template:
1YNR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18310 for 526 contacts (-34.8/contact) +
2D Compatibility (PS) -8862 + (NN) -8088 + (LL) 1896
1D Compatibility (HY) -6800 + (ID) 2250
Total energy: -42414.0 ( -80.63 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_1YNR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YNR-query.scw
PDB file :
Tito_Scwrl_1YNR.pdb
: