Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSFFHGVTVTNVDIGARTIALPASSVIGLCDVFTPGAQASAKPNVPVLLTSKKDAAAAFGIGSSIYLACEAIYNRAQAVIVAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNA-QPRLLVAPGHSAQQAVATAMDGLAEKL-RAIAILDGPNSTDEAAVAYAKNFGSKRLFM-VDPGVQV--W-DSATNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVT-GTSRPVEFLDGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRT-MDLVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAV-INFEVYADPDLNSASQLAQG-KVYWNIRFTDVPPAENPNFRVEVTDQWLTEVLDVA |
| 4RGL Chain:A ((8-335)) | -------------------YQPPYTI-------TPAIVNLVAEIGEIIGRYTVLAEQNLT-------PRLRRENRIRTIQASLAIENNTLTLEQVTAVIDGKRVLGHPREIQEVRNAFATYEAMED---------WDASVEGDLLAAHELLMRGLVDETGRYRSGGVGI-----FRGEQLVHMAPPADRVPKLMADLLDWLENTNEHPLVASCIFHYEFEFIHPFADGNG-----RMGRLWQTLILRNWKPLLAYLPVETVIRDR-QEDYYRVLAVADSQADA----TPFVEFMLGALRDAVREAVS------TDHQVTDQVAALIRAIGGGELSSNDLMQALGLSHRPTFRNNY-LNPAMEDEW-IERTQPDSPRSPTQRYRLTGKGQR------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24869 for 2318 contacts (-10.7/contact) +
2D Compatibility (PS) -32947 + (NN) -9202 + (LL) 5396
1D Compatibility (HY) -4400 + (ID) 2550
Total energy: -68572.0 ( -29.58 by residue)
QMean score : 0.215
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