Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEESGGRSFEDSCDEAEQRLLALARSA
3LT5 Chain:B ((2-212))
-SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFV------QYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEES-------SCDEAEQRLLALARSA
General information:
TITO was launched using:
RESULT:
Template:
3LT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121942 for 1570 contacts (-77.7/contact) +
2D Compatibility (PS) -22203 + (NN) -16998 + (LL) 280
1D Compatibility (HY) -25200 + (ID) 9900
Total energy: -195963.0 ( -124.82 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_3LT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LT5-query.scw
PDB file :
Tito_Scwrl_3LT5.pdb
: