Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVDGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLITL
3JPU Chain:B ((6-166))
-----GFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLA-------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3JPU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93259 for 1221 contacts (-76.4/contact) +
2D Compatibility (PS) -17274 + (NN) -4955 + (LL) 6644
1D Compatibility (HY) -22400 + (ID) 8050
Total energy: -139294.0 ( -114.08 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3JPU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JPU-query.scw
PDB file :
Tito_Scwrl_3JPU.pdb
: