Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIACLDLEGVLVP-EIWIAFAEKTGIDA-----LKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRE-RFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQ---LRQKDPKR----QSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLKREFLKASSRSLSL
3N28 Chain:A ((107-315))
PGLIVLDMDSTAIQIECIDEIAKLAGVGEEVAEVTERAMQGELDFEQSLRLRVSKLK--DAPEQILSQVRETLPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNTLEIV-SGKLTGQVLGEVVSAQTKADILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGVAYHAKPKVEAKAQTAVRFAGLGGVVCILSAALVAQQKL
General information:
TITO was launched using:
RESULT:
Template:
3N28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114386 for 1552 contacts (-73.7/contact) +
2D Compatibility (PS) -21123 + (NN) -9532 + (LL) 72
1D Compatibility (HY) -4000 + (ID) 2050
Total energy: -151019.0 ( -97.31 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_3N28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N28-query.scw
PDB file :
Tito_Scwrl_3N28.pdb
: