Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKTHLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKIDGCQAVADAITAEGGKATAIACHIGEMEQIQNVFAQIREQFGRLDILVNNAATNPQFCNVLETDLGAFQKTVDVNIRGYYFMSIEGGKLMKEHGGGSIINVASINGVSPGEFQGIYSVTKAAVISMTKVFAKECAQFGIRCNALLPGLTDTKFASALVKNDAIRNLALQRIPLKRVAEPSEMAGAVLYLASEASSYTTGVALNVDGGFLS
3O4R Chain:D ((13-259))
--------LANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPS
General information:
TITO was launched using:
RESULT:
Template:
3O4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156269 for 2157 contacts (-72.4/contact) +
2D Compatibility (PS) -26925 + (NN) -10567 + (LL) 572
1D Compatibility (HY) -13200 + (ID) 4600
Total energy: -210989.0 ( -97.82 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_3O4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O4R-query.scw
PDB file :
Tito_Scwrl_3O4R.pdb
: