Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRAINDPGNEDPGSLLETDADALLGGAAAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLLPA
3LMF Chain:A ((30-111))
--------------------MNHCLEAG-GKHVEADHLRLMMNCAEICQTSLNFMLSGSRFSPKVCGVCAEICDACAKSCEQL-D----GMEECVQTCRQCAEHCRKMAALE--------------------
General information:
TITO was launched using:
RESULT:
Template:
3LMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11436 for 477 contacts (-24.0/contact) +
2D Compatibility (PS) -8014 + (NN) -1704 + (LL) 1644
1D Compatibility (HY) 400 + (ID) 450
Total energy: -19560.0 ( -41.01 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_3LMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LMF-query.scw
PDB file :
Tito_Scwrl_3LMF.pdb
: