Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSKNTICLWYDSAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVM-GIPCLGLNGGP----AFRHSEAFSFQVATDDQAETDRLWNAIVDNGGEE---------SACGWCRDKWGISWQITPRVLSEAIASPDRAAARRAFEAMMTMGRIDIATIEKAFKG
2KJZ Chain:A ((9-120))
--------LYVD-NPPASTQFYKALLGVDPVES-S--P--------T---FSLFVLANGMKLGLWSRHTVEPKASVTGGGGELAFRVENDAQVDETFAGWKASGVAMLQQPAKMEFGYTFTAADPDSHRLRVYAF--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31548 for 652 contacts (-48.4/contact) +
2D Compatibility (PS) -10966 + (NN) -6978 + (LL) 4388
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -47354.0 ( -72.63 by residue)
QMean score : 0.328
(partial model without unconserved sides chains):
PDB file :
Tito_2KJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KJZ-query.scw
PDB file :
Tito_Scwrl_2KJZ.pdb
: