Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRRQQSGFTLIEIMVVVVILGILAALVVPQVMSRPDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGGSDNDADIGNWDN
4LW9 Chain:I ((4-107))
---------------------------------EKADQQKAVT---DIVALENALDMYKLDNSVYPTTDQGLEALVTKPT-NPEPRNYREGGYIKRLPKDPWGNDYQYLSPGDKGTIDVFTLGADGQEGGEGTGADIGNWN-
General information:
TITO was launched using:
RESULT:
Template:
4LW9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1018 for 736 contacts (1.4/contact) +
2D Compatibility (PS) -11691 + (NN) -12980 + (LL) 4016
1D Compatibility (HY) -8000 + (ID) 3250
Total energy: -30887.0 ( -41.97 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_4LW9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LW9-query.scw
PDB file :
Tito_Scwrl_4LW9.pdb
: