Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGAVPMLAIDGPSGAGKGTVAGLLARRLGWNLLDSGALYRLLAFAAVNHGVDLTNEEALKVLAAHLDVQFVAADGSHGQRIILEGEEVTDVIRTEQVGAGASQVAALPAVRDALLQRQRAFREAPGLVADGRDMGTVVFPDAPLKIFLTASAEERARRRYLQLKAKGADVDQSALLEEIRERDERDSQRAVAPLKPADDAILLDSTEMSIEAVVETIIRHCERQGWDV
1KDO Chain:B ((3-223))
--AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGN--LEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQK----
General information:
TITO was launched using:
RESULT:
Template:
1KDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130634 for 1802 contacts (-72.5/contact) +
2D Compatibility (PS) -24361 + (NN) -15497 + (LL) 100
1D Compatibility (HY) -22400 + (ID) 6750
Total energy: -199542.0 ( -110.73 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1KDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDO-query.scw
PDB file :
Tito_Scwrl_1KDO.pdb
: