Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKYIALPAVSLLALALAACSTPPNANLEQARSNFSALQSQPDATKVAALETKDAGDWLAKADKAYQDGEDQRDVDQLAYLTNQRIELAKQTIVLRNAEAQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGDVLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANYNQRLSERRADSVRMALLSR-GISPERVATRGYGKEYPVASNGTSSGRAMNRRVEVTISNDAKPVAPRSSVSG |
4G88 Chain:E ((16-120)) | -----------------------------------------------------------------------------------------------------------------------------------------------VFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATIT-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4G88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19721 for 758 contacts (-26.0/contact) +
2D Compatibility (PS) -11866 + (NN) -9194 + (LL) 11372
1D Compatibility (HY) -4400 + (ID) 2200
Total energy: -36009.0 ( -47.51 by residue)
QMean score : 0.576
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