Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPQIVILPHADHCPEGAVFEAKPGETILDAALRNGIEIEHACEKSCACTTCHVIVREG-LDSMEPSDELEDDMLDKAWGLEPDSRLSCQAVVADEDLVVEIPKYTINQVSEGH
2Y5C Chain:B ((22-109))
--------------------GRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPE---LEGAEFTLPKITR--
General information:
TITO was launched using:
RESULT:
Template:
2Y5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23084 for 609 contacts (-37.9/contact) +
2D Compatibility (PS) -9617 + (NN) -5051 + (LL) 1564
1D Compatibility (HY) -8000 + (ID) 1950
Total energy: -46138.0 ( -75.76 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_2Y5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y5C-query.scw
PDB file :
Tito_Scwrl_2Y5C.pdb
: