Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
1JFD Chain:B ((1-171))
-SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEI---VASFER
General information:
TITO was launched using:
RESULT:
Template:
1JFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95455 for 1333 contacts (-71.6/contact) +
2D Compatibility (PS) -18682 + (NN) -11201 + (LL) 468
1D Compatibility (HY) -20800 + (ID) 6150
Total energy: -151820.0 ( -113.89 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_1JFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFD-query.scw
PDB file :
Tito_Scwrl_1JFD.pdb
: