Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIDIDRLSKRFSGRTVVNDLSFRIDRGEIVGLLGPNGAGKSTTLKMLSGFLAPSAGSVRIFG--FDMQDKARQAQKLIGYLPENAPSYGEMTVEGFLAFVASIRDYSGREKRR--------RIDSAMDCMELRDERRSIIETLSKGFKRRVALAQAILHDPELLLLDEPTDGLDPNQKHQVRQLVKNLSESKI-VVISTHILEEVSFMCSRALVINGGRLLADNTPGELRTRSRYHHAVSLSIEAPVDPLAIAMLPGVAGIEGRPDRAGTLTILARPGAQILPALNRLIHGSGWRVSGVRTEHGQLEEVFRQLTREPPA |
4WBS Chain:B ((42-265)) | ---VRNLKKRYGSRTVVKDVSLDVKSGEVVGLLGPNGAGKTTSFYMIVGLVPLDAGEIDLDGKSISLLPIHKRASLGLSYLPQEASVFRKLSVEENIRAVLELQ--VG--GKRLSKDAIASRTEALLDELQISHLRENPALSLSGGERRRVEIARALATNPSFILLDEPFAGVDPIAVLEIQKIVKFLKQRNIGVLITDHNVRETLGICDHAYIISDGSVLAAGAPGDI------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WBS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119026 for 1650 contacts (-72.1/contact) +
2D Compatibility (PS) -22939 + (NN) -13219 + (LL) 6200
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -171084.0 ( -103.69 by residue)
QMean score : 0.548
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