Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIAAYQARCQARVDAALDALF--VAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLAD-TRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVESDTATLGKTQGKDQAHNKPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVERRN
4F62 Chain:B ((8-292))
----FSTYTQSRVDQYLEQQLSDYAPANQL---HNAMRYSLF-GGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAM---------------FDEATAILAGDALQTFAFELLSNPTSAQPE---LAIKLIQELVVASGRNGMITGQMIDLSSE--NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDL------------------KATYPKLLGLDGAKALVVRLHEQAIAQISEFGDKSQPLTDLANYIID---
General information:
TITO was launched using:
RESULT:
Template:
4F62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144334 for 2043 contacts (-70.6/contact) +
2D Compatibility (PS) -27772 + (NN) -24129 + (LL) 2252
1D Compatibility (HY) -24800 + (ID) 6450
Total energy: -225233.0 ( -110.25 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_4F62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F62-query.scw
PDB file :
Tito_Scwrl_4F62.pdb
: