Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLVLFCCLWLLPGVASAAPSVGEIRVVS-ETWTRYTQED---GRGVAWDLLRAVYEPAGVRLRIANEPYTRAVGLVLRGEADAWV-GAYRGEIDE--ALYPRWPYDVDPIAVLSLKDNP-PPPLEGLSRFRLSWMRGYAFARYFPT---LTPHSELQRRTSALPMLLNHRVDYFIDSRPELEEMLAGAGALAAEYRI--TDVTRLPLYLGFSDSPRGRELLALFDRRMRQLHASGELERIFARWNWPYAPLKAILPPKE
1WDN Chain:A ((4-224))
------------------------KLVVATDTAFVPFEFKQGDLYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSD-GYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAG--NGQFKAVGDSLEAQQYGIAFPKG--SDELRDKVNGALKTLRENGTYNEIYKKWFGTE-----------
General information:
TITO was launched using:
RESULT:
Template:
1WDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116795 for 1670 contacts (-69.9/contact) +
2D Compatibility (PS) -22707 + (NN) -11853 + (LL) 3184
1D Compatibility (HY) -8000 + (ID) 1350
Total energy: -157521.0 ( -94.32 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1WDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WDN-query.scw
PDB file :
Tito_Scwrl_1WDN.pdb
: