Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITACPRPCAWRSYALGLGLLPLAAQAEFLADSSAHLDLRNFYQLRDYRQHDAPQSQAGNWSQGFVLRLQSGFTGGPLGFGLDATGLLGVKLDSGRGRSNDGTLPFGANSKEPVDDYSHLGLTAKLRYSQTQLQVGILMPQLPVAFRDDVRLLPQTFDGALLTSSEIEGLTLTAGQLWKSRTRESAGSDDMYIMGRDKAHASDEFNLAGATYAFTPRLSA-SYYYGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDGAAISGPVDNRNLNAMLTLRAGAHAFGIGVQKMIGNDAFPVLNGYTTPYVANLMAYQTFTRPQEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDRGAGRADD-SEWERNTDLSYVIQSGPLKSVALKWRNITYRSRYGAD-LDENRFIVNYTLKLW |
4FMS Chain:A ((9-396)) | ----------------------------FLEDAKASLTARNFHLHRNF-VG-----KAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLD--------------------ADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAA-TSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPLGDWL-LGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHV-RLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDW---RFDENRLIVSYPLSL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FMS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44699 for 2817 contacts (-15.9/contact) +
2D Compatibility (PS) -35982 + (NN) 3217 + (LL) 1896
1D Compatibility (HY) -26800 + (ID) 8200
Total energy: -110568.0 ( -39.25 by residue)
QMean score : 0.177
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