Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
3UDE Chain:A ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR----ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
3UDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109043 for 1125 contacts (-96.9/contact) +
2D Compatibility (PS) -16046 + (NN) -9741 + (LL) 1224
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -154256.0 ( -137.12 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_3UDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDE-query.scw
PDB file :
Tito_Scwrl_3UDE.pdb
: