Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLR-QLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
1TMH Chain:B ((1-248))
MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLN-LSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQHDVDGFLVGGASLKP-EFVDIINAA--
General information:
TITO was launched using:
RESULT:
Template:
1TMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158891 for 2144 contacts (-74.1/contact) +
2D Compatibility (PS) -26889 + (NN) -12461 + (LL) -416
1D Compatibility (HY) -19200 + (ID) 6450
Total energy: -224307.0 ( -104.62 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1TMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMH-query.scw
PDB file :
Tito_Scwrl_1TMH.pdb
: