Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSQDIHARSATTTPMPSVRNQEEVAKLIDVSKCIGCKACQVACSEWNELRDEVGHNHGTYDNPMDLTADSWTVMRFTEHENEAGNLEWLIRKDGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFDIPRISQKDHKAYKCSLCSDRVSVGMEPACVKTCPTGAIVFGSKEDMKE------HAAERIVDLKSRGYENAGLYDPEGVGGTHVMYVLHHADKPSLYAGLADQPSVSPLVSLWKGVTKPLALLAMGATVLAGFFHYVRVGPNRADDEEDHGQAEAPVHQVDPSVHTFDPHERR |
2VPX Chain:F ((5-166)) | -------------------------AMAIDLSLCVGCAACAVACKMENEVPPGV--------------FNLWIRER---EVGEYPNLVVEFRPEQCLHCENPPCVPVCPT-GASYQTKDGLVLVDPKKCIACGACIAACPYDA-RYLHPAGYVSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLEDPESPVAKALKAAERVDVLR------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VPX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -60178 for 1125 contacts (-53.5/contact) +
2D Compatibility (PS) -16075 + (NN) -5749 + (LL) 6696
1D Compatibility (HY) -10400 + (ID) 3250
Total energy: -88956.0 ( -79.07 by residue)
QMean score : 0.264
|
|
|