Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRDQGVKYPSGFTIPDDREAADLLALARDLGINLIDTAPAYGRSEERLGPLLRGQREHWVIVSKVGEEFVDGQSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALASGHACLGAGQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALKKA
4EXA Chain:C ((23-290))
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRD---------TIPDDREAADLLALARDLGINLIDTAPAYGRSEERLGPLLRGQREHWVIVSKVGEE----QSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALAS-------GQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALK--
General information:
TITO was launched using:
RESULT:
Template:
4EXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168225 for 2179 contacts (-77.2/contact) +
2D Compatibility (PS) -26836 + (NN) -12528 + (LL) 592
1D Compatibility (HY) -31600 + (ID) 12400
Total energy: -250997.0 ( -115.19 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_4EXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EXA-query.scw
PDB file :
Tito_Scwrl_4EXA.pdb
: