Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHEDD
4TOF Chain:D ((1-157))
MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHED-
General information:
TITO was launched using:
RESULT:
Template:
4TOF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38485 for 1186 contacts (-32.4/contact) +
2D Compatibility (PS) -17278 + (NN) -12062 + (LL) -76
1D Compatibility (HY) -23200 + (ID) 7750
Total energy: -98851.0 ( -83.35 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4TOF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TOF-query.scw
PDB file :
Tito_Scwrl_4TOF.pdb
: