Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSALLILALVGAAVAFPLEDDDKIVGGYTCPEHSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGDEQFINAAKIIKHPNYSSWTLNNDIMLIKLSSPVKLNARVAPVALPSACAPAGTQCLISGWGNTLSNGVNNPDLLQCVDAPVLSQADCEAAYPGEITSSMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGYGCALPDNPGVYTKVCNFVGWIQDTIAAN
1TRM Chain:A ((1-223))
-----------------------IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN
General information:
TITO was launched using:
RESULT:
Template:
1TRM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162407 for 1931 contacts (-84.1/contact) +
2D Compatibility (PS) -24745 + (NN) -12468 + (LL) 2128
1D Compatibility (HY) -32400 + (ID) 9950
Total energy: -239842.0 ( -124.21 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1TRM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TRM-query.scw
PDB file :
Tito_Scwrl_1TRM.pdb
: