Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVQSRMTPCLPYLTG----SG---P----------------LGRCCGGVKGLLGAAKTPADRKTVCTCLKSAAGSIG---GI-------NVRKAAGLPNMCGVNIPYQISPSTDCTKVQ
1PSY Chain:A ((25-119))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCM-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33998 for 468 contacts (-72.6/contact) +
2D Compatibility (PS) -6039 + (NN) -1177 + (LL) 1636
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -44328.0 ( -94.72 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: