Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKPDIINPNFSVWVNASAGTGKTKILIDRVLRLLLE-NK--RNIFCLTFTNAAANEMESRIHNILSKWAVCSDNELIASLEQLDLSLLLLQHHYPPSHPFLSSQCLTLRSRWPQTKNSEVFNHYLIQARRLFSELENLDLTIQTVHAFCYKLISSFPAEAGIVPNCTLSECKELHSIVFDKLLHNEAVQDSIKFIAAEVDENKLRDLLYTLCIKRSVSANNLEYVKGKLSAPDEIHGLQSEATEQIERLAEILSKGSKRDRNYSKMLDLTSSSFIQVADTRIQKLDSSATRWNDISIENLVKVFLKSESCEKKSISSIITKSTLEKFPGAEQVIENIQNAVFTHVRDINSYQIFKRTSSFLDIFKVYIDLYNSEKSKNALLDYNDIIDLATNLLSNPDYKNWVLFNLDQKIDHILVDEAQDNSISQWKIIANLCDEFFIRNDEKRTLFVVGDVKQSIYRFQGANPHLFNCMQQYFHTKSGGKDWISCQLEKSFRSTPETLTLVDRLFNNFREEISFVDSEIKHIPYRENDQGYVEIWPLLPRCKEEEQQALQIHLMHRKDYIITDRLLAQAIAHKIHNWLNEGRILVAKNRHIEPRDIMILVRQRNMLVDYVISELKKANIPVVGRDYFRIMDYIAVQDLIALTEFLLLPTNDLALANALKSPLFNFTEDDLFNIAYDRKEQSLWERLQN--------Y---SE-DIYSKLNDLINLSHIESPLTLFTHILR--TGKKKFAAR--LGL-ECFEVLDEFMNLVLQFENP----SLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPKNSESIVLDAMGAPFLCGKNNNAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYILGKEPVQ---------KGSWYDIITKYGEPYEKKYMELHQIFKEKVEVLCVNANYPYIYKKRDYFNIPAVLPPPNLSILFQHSPSPSQYPLLSPQCFDTGIHSFSPLDSSVTHWDDKKRNTWMTDGYTRGLIIHSILQYMPKIEKDRRKNWIGKYLDNINIRKNKDEIYRKILAFNEKYDYLFDLDGKSEITLSGTINGKPVLVRLDKLCITQDKAIIIDYKSHRNVSVSSLNEIKKQMLIYKTLVQEICPNKQVECMVIWVEDLTIQSDF |
| 1PJR Chain:A ((20-643)) | ----VRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA-------------------------------------------------------------------AE-DVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQL-SVMKTILKEK---------NI-----DPKKF-----E-----------------------------------PRT------ILGT-----ISAAKN-----------------------------------EL-L---------------PPEQ---FA-----------KR----------YYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVP---DVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAER-------FQNICAVGDADQSIYRWRGADIQNILSFERDYPN------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP-K-----------------RIWTENPEGKP--ILYY---------EAMNEADEAQFVAGRIREAVERG--------ERRYRDFAVLYRTNAQS-RVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTID----------LFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALIS----------GDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRS------------------------LEDDDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETASR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PJR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -293637 for 4552 contacts (-64.5/contact) +
2D Compatibility (PS) -60254 + (NN) -28105 + (LL) 37248
1D Compatibility (HY) -26400 + (ID) 7000
Total energy: -378148.0 ( -83.07 by residue)
QMean score : 0.446
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