Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEEPVEKKWRIKRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYKVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANCDTPAP-VVINEYTNIASDLLDKPSEIGFINGLLDKAKSAVKLNKNS
3R2D Chain:B ((45-128))
--------------------------------------------------------------YEYAKKLVDTAVRHIEEIDSIIEKHL-KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAG-KFVNGVLSAIYKAYITS---
General information:
TITO was launched using:
RESULT:
Template:
3R2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54281 for 556 contacts (-97.6/contact) +
2D Compatibility (PS) -8440 + (NN) -1822 + (LL) 5424
1D Compatibility (HY) -6800 + (ID) 1350
Total energy: -67269.0 ( -120.99 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_3R2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R2D-query.scw
PDB file :
Tito_Scwrl_3R2D.pdb
: