Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYPDFTLENKLSGVIAGVDEVGRGPLAGPVMSAAVVFTNRN-IIIEGINDSKKLTAKNRQVLYEKIISVAKFGIGMASVAEINSYNI----LQATKLSMERALVNLGIELDYVLVDGNQP-PK-V--------KWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDAINLYGVT-EHHRKSFAPILNSTKRALL
1I39 Chain:A ((1-200))
--------------MKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRL--KPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFGSGYASDPRTREVLKEWIASGRIPSCVRMRWKTVSNLRQK---
General information:
TITO was launched using:
RESULT:
Template:
1I39.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75226 for 1445 contacts (-52.1/contact) +
2D Compatibility (PS) -19847 + (NN) -10246 + (LL) 1180
1D Compatibility (HY) -3200 + (ID) 2200
Total energy: -109539.0 ( -75.81 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_1I39.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I39-query.scw
PDB file :
Tito_Scwrl_1I39.pdb
: