Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKALVKTREGHGNLELLDKEVATPLDDKVKIKVHYAGICGTDIHTYE----GHYKVNFPVTLGHEFSGEIVEVGADVKDFKVGDRVTSETTFYVCNECEYCKSKDYNLCNHRKGIGTQVDGVFTNYVIAREESLHHIPDEVSYQSAAMTEPLACAHHGVSKIQVNSGDVAVVMGPGPIGLLVAQVLKSKGATVVVTGLDNDKVRLDKAEALHMDYVVNLQQTDLKTYINGITDGYGADVVVECSGAVPAARQGLDIIRKKGFYSQIGIFKDAEIPFDME-KVIQKEITVVGSRSQKPADWEPSLQ---LMADGLVNAEALVTKIYDISKWDEAYQHLKSGEGIKALLKPLDLDENEGEN |
2DQ4 Chain:B ((1-341)) | MRALAKLAPEEG-LTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHI-VCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVS-DPNPYRLAFARP-YADRLVNPLEEDLLEVVRRVT-GSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSD-PIRFDLAGELVMRGITAFGIAGRR--LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDP---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125326 for 2935 contacts (-42.7/contact) +
2D Compatibility (PS) -34771 + (NN) -3954 + (LL) 616
1D Compatibility (HY) -21600 + (ID) 5600
Total energy: -190635.0 ( -64.95 by residue)
QMean score : 0.476
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