Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKFTAIAKAIFVLGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNVSG-QSQGYYDSNVLLFNQQNQKFQVFLLGKDENKYKEKTHG-LDVFAVPELVDLDGRIFSVSGVTKKNVKSIFESLRTPNLLVKKIDDKDGFSIDEFFFIQKEEVSLKELDFKIRKLLIKKYKLYEGSAD--KGRIVINMKDENKYEIDLSDKLDFERMADVINSEQIKNIEVNLK |
4RFB Chain:D ((30-215)) | ---------------------------------------------LKYYYSKPSIELKNLDGLYRQKVTDKGVYVWKDRKDYF-VGLLGKDIEKYPQGEHDKQDAFLVIEEETVNGRQYSIGGLSKTNSKEFSKEVDVK--VTRKIDESSEKSKDSKFKITKEEISLKELDFKLRKKLMEEEKLY-GAVNNRKGKIVVKMEDDKFYTFELTKKLQPHRMGDTIDGTKIKEINVEL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RFB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -37649 for 1351 contacts (-27.9/contact) +
2D Compatibility (PS) -19276 + (NN) 125 + (LL) 4228
1D Compatibility (HY) -13200 + (ID) 3900
Total energy: -69672.0 ( -51.57 by residue)
QMean score : 0.430
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