Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKDADVAIDFSNPNLLFPLLD--EEFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
1VM6 Chain:C ((13-223))
MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVD-----------VNGVEELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILL---------------------ESALGKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEV
General information:
TITO was launched using:
RESULT:
Template:
1VM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123556 for 1620 contacts (-76.3/contact) +
2D Compatibility (PS) -22577 + (NN) -10497 + (LL) 1832
1D Compatibility (HY) -19600 + (ID) 4350
Total energy: -178748.0 ( -110.34 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_1VM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VM6-query.scw
PDB file :
Tito_Scwrl_1VM6.pdb
: