Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLKQYVSEVQDWPKPGVSFKDITTIMDNGEAYGYATDKIVEYAKDRD---VDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYDLEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEAAIKLVEKLGGIVVGIAFIIELKYLNGIEKIKDYDVMSLISYDE
1ZN8 Chain:B ((9-180))
--VEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE-
General information:
TITO was launched using:
RESULT:
Template:
1ZN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149556 for 1349 contacts (-110.9/contact) +
2D Compatibility (PS) -17714 + (NN) 313 + (LL) 236
1D Compatibility (HY) -16000 + (ID) 3150
Total energy: -185871.0 ( -137.78 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_1ZN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZN8-query.scw
PDB file :
Tito_Scwrl_1ZN8.pdb
: