Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNLETYFKNSQPLNEYIDGMKTNQDTVLSIYQSFELPEDDSRIKKIKEMNYSKVLVITEDWCGDAMMNLPILKHISEAL--NLEVRVFHRDDDTKLIDQYLTNGKSRAIPIFVFLNDQFEQETVW-GP-RANEVQKFVTDVRADKLPSKDHPDYADLEKETHLVISNRYKTDASFWKAVYNSILNKLENK
3TCO Chain:A ((19-107))
-----------------------------------------------RNNKL-VLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKY---SV-LNIPTTLIF-VNGQLVDSLVGAVDEDTLESTVNKY-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55975 for 571 contacts (-98.0/contact) +
2D Compatibility (PS) -9277 + (NN) -3876 + (LL) 5704
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -68524.0 ( -120.01 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3TCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TCO-query.scw
PDB file :
Tito_Scwrl_3TCO.pdb
: