Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MQFEMRKIAFNAPKAFSLEHEGVV-----------LEGEIVRVGAKL------------FRLKARLKGELMLI----CDTSGKEFKKSLDESLVLHISDG----LWD---TQSQSLDFDNLDVIESFNGFI--DLSEILRSEVE-----SIKLDYHYAD---
4TJV Chain:A ((1-165))
GSRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHP
General information:
TITO was launched using:
RESULT:
Template:
4TJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28779 for 810 contacts (-35.5/contact) +
2D Compatibility (PS) -12132 + (NN) 4601 + (LL) 0
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -43110.0 ( -53.22 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_4TJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TJV-query.scw
PDB file :
Tito_Scwrl_4TJV.pdb
: