Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDSFEILKALKSLDLL-KNAPAWWW-PNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVTKEWLLDQKGIGKESADAILCYVCAKEVMVVDKYSYLFLKKLGIEI--EDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELKL
1KG2 Chain:A ((6-195))
------FSAQVLDWYDKYGRKT-LPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFP-------TVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVATLHGG----KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPA------------VGVERFNQAMMDLGAMICTRSK
General information:
TITO was launched using:
RESULT:
Template:
1KG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60143 for 1409 contacts (-42.7/contact) +
2D Compatibility (PS) -19947 + (NN) -12417 + (LL) 2528
1D Compatibility (HY) -6800 + (ID) 1400
Total energy: -98179.0 ( -69.68 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1KG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KG2-query.scw
PDB file :
Tito_Scwrl_1KG2.pdb
: