Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYSYEAFLKDSLELAKQVERLCGIPEALVCVMRGGMTLVHFLSLHWNLREVYGINAISYDTTKRQNALKIENTPTIK----DHL--KTILVVDEIVDSGNSLEAVLKVLQDKHPDKKFYSASLFQKTSAKYKADAFLKDAPEWIDFFWEVDLKNLKSH
5BQO Chain:E ((29-148))
------------------------IPDVLIAVLTGGIIPAKLLSDLLDLKVIRYIDIKFY-----RSVGKTESKPVIRSVYTDSLEGKKVLVVDDVADTGETLEAVSNVITMFNP-AKVMTAALYLKPWSKRIPDFYYKQIDKWIIFPWDKWDVVRENS
General information:
TITO was launched using:
RESULT:
Template:
5BQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66213 for 826 contacts (-80.2/contact) +
2D Compatibility (PS) -11933 + (NN) -3925 + (LL) 2280
1D Compatibility (HY) -8800 + (ID) 2050
Total energy: -90641.0 ( -109.73 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_5BQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BQO-query.scw
PDB file :
Tito_Scwrl_5BQO.pdb
: