Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKILLTNDDGYHAKGIKALEQALENMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNVFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLKWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK |
| 2V4O Chain:D ((16-257)) | --RILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGD---IAVQMGTPTDCVYLGVNALMRPRP-DIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSL-------NGYQHYDTAAAVTCALLRGLSRE--PLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPD----TDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V4O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69973 for 2000 contacts (-35.0/contact) +
2D Compatibility (PS) -25545 + (NN) -1461 + (LL) 920
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -119159.0 ( -59.58 by residue)
QMean score : 0.353
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