Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANSMQDSMTHENFNNAYPTNYNAPSQDPFSQAQSYPQNAYTKENSQAQPSKYQNSVPEINIDEEEIPF
3VDY Chain:B ((4-108))
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEI--EADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR--------NVYVTEVLADTVRFMDP--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54028 for 617 contacts (-87.6/contact) +
2D Compatibility (PS) -10597 + (NN) -3295 + (LL) 2736
1D Compatibility (HY) -7600 + (ID) 1850
Total energy: -74634.0 ( -120.96 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_3VDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDY-query.scw
PDB file :
Tito_Scwrl_3VDY.pdb
: