Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLLAILSMVLLLSLAACGGSSDSSKDKNGKEEIVMWGSWSGD-QIKQLEKQIDSYNKSQDKYKVKYVMQE--NVEEKLLTGIAGGELPDIIMWDRYQTALYAPKGVLEPLDKLVKEDNLKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGVKPPTTWDELATAAQKTTKW-DGNKMTQAGMSLQDVG-LFN-LYLMQAGGELVTSDN-----KETAFNSEQGLEVLNYWDKMQNDLKVYQRG-FDDGSDAFAAGKEAMTYNGPWALADYNKVEDLDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVNTMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKALSQAEKEGNQILKEERDK |
| 2ZYO Chain:A ((13-395)) | ---------------------------KSEGKPDKLVVWENADDGVQLNNTKKWAGEFTKK-TGIQVEVVPVALLKQQEKLTLDGPAGKGADLVTWPHDRLGEAVTKGLLQPIQVDNS----VKNQFDDVAMKALTYGGKLYGLPKAIESVALIYNKKLMGQ----VPATYDELFQYAKANNKPDEQKY----GVLFEANNFYYTYFLFAAKGAAVFKEQDGTLDPNEIGLNSPEAVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGKVAAVINGPWAIKDYQA-AGINVGVAPLPKIDGKDAQTFIGVKGWYLSAYSKYPKYATELMQFLTS-KEALASRFKETGEIPPQKELLNDPMIKNNPVVNGFAKQASKGVPMPSIPEMGVVW-EPINNAHTFVAQGKQTPEQALNDAVKIMKEKIQTM--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2ZYO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41127 for 3170 contacts (-13.0/contact) +
2D Compatibility (PS) -40275 + (NN) -19951 + (LL) 3432
1D Compatibility (HY) -11600 + (ID) 4350
Total energy: -113871.0 ( -35.92 by residue)
QMean score : 0.471
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